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Detection of senescence using machine learning algorithms based on nuclear features

Imanol Durán, Joaquim Pombo, Bin Sun, Suchira Gallage, Hiromi Kudo, Domhnall McHugh, Laura Bousset, Jose Efren Barragan Avila, Roberta Forlano, Pinelopi Manousou, Mathias Heikenwälder, Dominic J. Withers, Santiago Vernia, Robert Goldin, Jesús Gil

Nature Communications · 2024 · ▲ 75 citations

Abstract

Cellular senescence(definition) is a stress response with broad pathophysiological implications. Senotherapies can induce senescence to treat cancer or eliminate senescent cells to ameliorate ageing and age-related pathologies. However, the success of senotherapies is limited by the lack of reliable ways to identify senescence. Here, we use nuclear morphology features of senescent cells to devise machine-learning classifiers that accurately predict senescence induced by diverse stressors in different cell types and tissues. As a proof-of-principle, we use these senescence classifiers to characterise senolytics(definition) and to screen for drugs that selectively induce senescence in cancer cells but not normal cells. Moreover, a tissue senescence score served to assess the efficacy of senolytic drugs and identified senescence in mouse models of liver cancer initiation, ageing, and fibrosis, and in patients with fatty liver disease. Thus, senescence classifiers can help to detect pathophysiological senescence and to discover and validate potential senotherapies.

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OpenAlex
DOI
10.1038/s41467-024-45421-w
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2026-06-15 MST

Cite this

APA
Durán, I., Pombo, J., Sun, B., Gallage, S., Kudo, H., McHugh, D., Bousset, L., Avila, J.E.B., Forlano, R., Manousou, P., Heikenwälder, M., Withers, D.J., Vernia, S., Goldin, R., &amp; Gil, J. (2024). Detection of senescence using machine learning algorithms based on nuclear features. <em>Nature Communications</em>. https://doi.org/10.1038/s41467-024-45421-w
Vancouver
Durán I, Pombo J, Sun B, Gallage S, Kudo H, McHugh D, et al. Detection of senescence using machine learning algorithms based on nuclear features. Nature Communications. 2024. doi:10.1038/s41467-024-45421-w.
BibTeX
@article{imanol2024Detect, title = {Detection of senescence using machine learning algorithms based on nuclear features}, author = {Imanol Durán and Joaquim Pombo and Bin Sun and Suchira Gallage and Hiromi Kudo and Domhnall McHugh and Laura Bousset and Jose Efren Barragan Avila and Roberta Forlano and Pinelopi Manousou and Mathias Heikenwälder and Dominic J. Withers and Santiago Vernia and Robert Goldin and Jesús Gil}, journal = {Nature Communications}, year = {2024}, doi = {10.1038/s41467-024-45421-w}, }

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