Skip to content
Open access · CC-BY via OpenAlex

Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer

Zaoqu Liu, Long Liu, Siyuan Weng, Chunguang Guo, Qin Dang, Hui Xu, Libo Wang, Taoyuan Lu, Yuyuan Zhang, Zhenqiang Sun, Xinwei Han

Nature Communications · 2022 · ▲ 931 citations

Abstract

Long noncoding RNAs (lncRNAs) are recently implicated in modifying immunology in colorectal cancer (CRC). Nevertheless, the clinical significance of immune-related lncRNAs remains largely unexplored. In this study, we develope a machine learning-based integrative procedure for constructing a consensus immune-related lncRNA signature (IRLS). IRLS is an independent risk factor for overall survival and displays stable and powerful performance, but only demonstrates limited predictive value for relapse-free survival. Additionally, IRLS possesses distinctly superior accuracy than traditional clinical variables, molecular features, and 109 published signatures. Besides, the high-risk group is sensitive to fluorouracil-based adjuvant chemotherapy, while the low-risk group benefits more from bevacizumab. Notably, the low-risk group displays abundant lymphocyte infiltration, high expression of CD8A and PD-L1, and a response to pembrolizumab. Taken together, IRLS could serve as a robust and promising tool to improve clinical outcomes for individual CRC patients.

◌ CITATION ONLY
Full text is not openly licensed for redistribution here. Read it at the source:

Read at source →

Provenance

Source
OpenAlex
DOI
10.1038/s41467-022-28421-6
Canonical
link ↗
Fetched
2026-07-25 MST

Cite this

APA
Liu, Z., Liu, L., Weng, S., Guo, C., Dang, Q., Xu, H., Wang, L., Lu, T., Zhang, Y., Sun, Z., &amp; Han, X. (2022). Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer. <em>Nature Communications</em>. https://doi.org/10.1038/s41467-022-28421-6
Vancouver
Liu Z, Liu L, Weng S, Guo C, Dang Q, Xu H, et al. Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer. Nature Communications. 2022. doi:10.1038/s41467-022-28421-6.
BibTeX
@article{zaoqu2022Machin, title = {Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer}, author = {Zaoqu Liu and Long Liu and Siyuan Weng and Chunguang Guo and Qin Dang and Hui Xu and Libo Wang and Taoyuan Lu and Yuyuan Zhang and Zhenqiang Sun and Xinwei Han}, journal = {Nature Communications}, year = {2022}, doi = {10.1038/s41467-022-28421-6}, }

Research neighborhood

References, citing works, and semantically nearest findings. Click a node to open it.

Related findings