Preprint · CC-BY
via bioRxiv
Evaluating Synthetic Diffusion MRI Maps created with Diffusion Denoising Probabilistic Models
Chattopadhyay, T., Jagad, C., Kush, R., Desai, V. D., Thomopoulos, S. I., Villalon-Reina, J. E., Thompson, P. M.
biorxiv · 2025
Abstract
Generative AI models, such as Stable Diffusion, DALL-E, and MidJourney, have recently gained widespread attention as they can generate high-quality synthetic images by learning the distribution of complex, high-dimensional image data. These models are now being adapted for medical and neuroimaging data, where AI-based tasks such as diagnostic classification and predictive modeling typically use deep learning methods, such as convolutional neural networks (CNNs) and vision transformers (ViTs), with interpretability enhancements. In our study, we trained latent diffusion models (LDM) and denoising diffusion probabilistic models (DDPM) specifically to generate synthetic diffusion tensor imaging (DTI) maps. We developed models that generate synthetic DTI maps of mean diffusivity by training on real 3D DTI scans, and evaluating realism and diversity of the synthetic data using maximum mean discrepancy (MMD) and multi-scale structural similarity index (MS-SSIM). We also assess the performance of a 3D CNN-based sex classifier, by training on combinations of real and synthetic DTIs, to check if performance improved when adding the synthetic scans during training, as a form of data augmentation. Our approach efficiently produces realistic and diverse synthetic data, potentially helping to create interpretable AI-driven maps for neuroscience research and clinical diagnostics.
◌ CITATION ONLY
Full text is not openly licensed for redistribution here. Read it at the source:
Provenance
- Source
- bioRxiv
- DOI
- 10.1101/2024.11.06.621173
- Canonical
- link ↗
- Fetched
- 2026-10-09 MST
Cite this
APA
T., C., C., J., R., K., D., D.V., I., T.S., E., V.J., & M., T.P. (2025). Evaluating Synthetic Diffusion MRI Maps created with Diffusion Denoising Probabilistic Models. <em>biorxiv</em>. https://doi.org/10.1101/2024.11.06.621173
Vancouver
T. C, C. J, R. K, D. DV, I. TS, E. VJ, et al. Evaluating Synthetic Diffusion MRI Maps created with Diffusion Denoising Probabilistic Models. biorxiv. 2025. doi:10.1101/2024.11.06.621173.
BibTeX
@unpublished{chattopadhyay2025Evalua,
title = {Evaluating Synthetic Diffusion MRI Maps created with Diffusion Denoising Probabilistic Models},
author = {Chattopadhyay, T. and Jagad, C. and Kush, R. and Desai, V. D. and Thomopoulos, S. I. and Villalon-Reina, J. E. and Thompson, P. M.},
journal = {biorxiv},
year = {2025},
doi = {10.1101/2024.11.06.621173},
}
Research neighborhood
References, citing works, and semantically nearest findings. Click a node to open it.
Related findings
Chinese University of Hong Kong 2025
Open access · US-GOV
Simulation-informed Modelling and Personalized Evaluation (SIMPLE): A Computational Study of MRI-based Brain Age Matrices
biorxiv 2025
Preprint · CC-BY
Conditional Denoising Diffusion Probabilistic Models with Attention for Subject-Specific Brain Network Synthesis
Journal of Neuroscience 2004
Open access · CC-BY
Friedreich Ataxia Mouse Models with Progressive Cerebellar and Sensory Ataxia Reveal Autophagic Neurodegeneration in Dorsal Root Ganglia
biorxiv 2025
Preprint · CC-BY
Precise calcium-to-spike inference using biophysical generative models
Proceedings of the National Academy of Sciences 2022
Open access · CC-BY
Age-related brain atrophy is not a homogenous process: Different functional brain networks associate differentially with aging and blood factors
Cell 2018
Open access · OA