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methylclock : a Bioconductor package to estimate DNA methylation age

Dolors Pelegrí-Sisó, Paula de Prado-Bert, Justiina Ronkainen, Mariona Bustamante, Juan R. González

Bioinformatics · 2020 · ▲ 233 citations

Abstract

MOTIVATION: Ageing is a biological and psychosocial process related to diseases and mortality. It correlates with changes in DNA methylation (DNAm) in all human tissues. Therefore, epigenetic markers can be used to estimate biological age using DNAm profiling across tissues. RESULTS: We developed a Bioconductor package that allows computation of several existing DNAm adult/childhood and gestational age clocks. Functions to visualize the DNAm age prediction versus chronological age and the correlation between DNAm clocks are also available as well as other features, such as missing data imputation of cell types' estimates, that are required for DNAm age clocks. AVAILABILITY AND IMPLEMENTATION: https://github.com/isglobal-brge/methylclock. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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Provenance

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OpenAlex
DOI
10.1093/bioinformatics/btaa825
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2026-09-16 MST

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APA
Pelegrí-Sisó, D., Prado-Bert, P.D., Ronkainen, J., Bustamante, M., &amp; González, J.R. (2020). methylclock : a Bioconductor package to estimate DNA methylation age. <em>Bioinformatics</em>. https://doi.org/10.1093/bioinformatics/btaa825
Vancouver
Pelegrí-Sisó D, Prado-Bert PD, Ronkainen J, Bustamante M, González JR. methylclock : a Bioconductor package to estimate DNA methylation age. Bioinformatics. 2020. doi:10.1093/bioinformatics/btaa825.
BibTeX
@article{dolors2020methyl, title = {methylclock : a Bioconductor package to estimate DNA methylation age}, author = {Dolors Pelegrí-Sisó and Paula de Prado-Bert and Justiina Ronkainen and Mariona Bustamante and Juan R. González}, journal = {Bioinformatics}, year = {2020}, doi = {10.1093/bioinformatics/btaa825}, }

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